Ash Alizadehhttp://med.stanford.edu/profiles/frdActionServlet?choiceId=printerprofile&fid=9558shapeimage_2_link_0
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BROWN LAB PUBLICATIONS


Palmer C, Diehn M, Alizadeh AA, Brown PO "Cell-type specific gene expression profiles of leukocytes in human peripheral blood." BMC Genomics 2006; 7: 115.

Chang HY, Sneddon JB, Alizadeh AA, Sood R, West RB, Montgomery K, Chi JT, Rijn Mv M, Botstein D, Brown PO "Gene Expression Signature of Fibroblast Serum Response Predicts Human Cancer Progression: Similarities between Tumors and Wounds." PLoS Biol 2004; 2: 2: E7.

Whitney AR, Diehn M, Popper SJ, Alizadeh AA, Boldrick JC, Relman DA, Brown PO "Individuality and variation in gene expression patterns in human blood." Proc Natl Acad Sci U S A 2003; 100: 4: 1896-901.

Roose JP, Diehn M, Tomlinson MG, Lin J, Alizadeh AA, Botstein D, Brown PO, Weiss A "T cell receptor-independent basal signaling via Erk and Abl kinases suppresses RAG gene expression." PLoS Biol 2003; 1: 2: E53.

Diehn M, Alizadeh AA, Rando OJ, Liu CL, Stankunas K, Botstein D, Crabtree GR, Brown PO "Genomic expression programs and the integration of the CD28 costimulatory signal in T cell activation." Proc Natl Acad Sci U S A 2002; 99: 18: 11796-801.

Clément K, Viguerie N, Diehn M, Alizadeh A, Barbe P, Thalamas C, Storey JD, Brown PO, Barsh GS, Langin D "In vivo regulation of human skeletal muscle gene expression by thyroid hormone." Genome Res 2002; 12: 2: 281-91.

Boldrick JC, Alizadeh AA, Diehn M, Dudoit S, Liu CL, Belcher CE, Botstein D, Staudt LM, Brown PO, Relman DA "Stereotyped and specific gene expression programs in human innate immune responses to bacteria." Proc Natl Acad Sci U S A 2002; 99: 2: 972-7.

Rosenwald A, Alizadeh AA, Widhopf G, Simon R, Davis RE, Yu X, Yang L, Pickeral OK, Rassenti LZ, Powell J, Botstein D, Byrd JC, Grever MR, Cheson BD, Chiorazzi N, Wilson WH, Kipps TJ, Brown PO, Staudt LM "Relation of gene expression phenotype to immunoglobulin mutation genotype in B cell chronic lymphocytic leukemia." J Exp Med 2001; 194: 11: 1639-47.

Hastie T, Tibshirani R, Eisen MB, Alizadeh A, Levy R, Staudt L, Chan WC, Botstein D, Brown P "'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns." Genome Biol 2000; 1: 2: RESEARCH0003.

Lossos IS, Alizadeh AA, Eisen MB, Chan WC, Brown PO, Botstein D, Staudt LM, Levy R "Ongoing immunoglobulin somatic mutation in germinal center B cell-like but not in activated B cell-like diffuse large cell lymphomas." Proc Natl Acad Sci U S A 2000; 97: 18: 10209-13.

Diehn M, Alizadeh AA, Brown PO "Examining the living genome in health and disease with DNA microarrays." JAMA 2000; 283: 17: 2298-9.

Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, Powell JI, Yang L, Marti GE, Moore T, Hudson J, Lu L, Lewis DB, Tibshirani R, Sherlock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Levy R, Wilson W, Grever MR, Byrd JC, Botstein D, Brown PO, Staudt LM "Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling." Nature 2000; 403: 6769: 503-11.

Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO "Genome-wide analysis of DNA copy-number changes using cDNA microarrays." Nat Genet 1999; 23: 1: 41-6.

Alizadeh A, Eisen M, Davis RE, Ma C, Sabet H, Tran T, Powell JI, Yang L, Marti GE, Moore DT, Hudson JR, Chan WC, Greiner T, Weisenburger D, Armitage JO, Lossos I, Levy R, Botstein D, Brown PO, Staudt LM "The lymphochip: a specialized cDNA microarray for the genomic-scale analysis of gene expression in normal and malignant lymphocytes." Cold Spring Harb Symp Quant Biol 1999; 64: 71-8.

Alizadeh A, Eisen M, Botstein D, Brown PO, Staudt LM "Probing lymphocyte biology by genomic-scale gene expression analysis." J Clin Immunol 1998; 18: 6: 373-9.