Mike Eisenhttp://rana.lbl.gov/eisen/shapeimage_2_link_0
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BROWN LAB PUBLICATIONS


Palmer C, Bik EM, Eisen MB, Eckburg PB, Sana TR, Wolber PK, Relman DA, Brown PO "Rapid quantitative profiling of complex microbial populations." Nucleic Acids Res 2006; 34: 1: e5.

Eisen MB, Brown PO, Varmus HE "PLoS Medicine - a medical journal for the internet age" PLoS Medicine 2004; 1: 1: e31.

Brown PO, Eisen MB, Varmus HE "Why PLoS became a publisher." PLoS Biol 2003; 1: 1: E36.

Eisen MB, Brown PO, Varmus HE "Public-access group supports PubMed Central." Nature 2002; 419: 6903: 111.

Sherlock G, Hernandez-Boussard T, Kasarskis A, Binkley G, Matese JC, Dwight SS, Kaloper M, Weng S, Jin H, Ball CA, Eisen MB, Spellman PT, Brown PO, Botstein D, Cherry JM "The Stanford Microarray Database." Nucleic Acids Res 2001; 29: 1: 152-5.

Sørlie T, Perou CM, Tibshirani R, Aas T, Geisler S, Johnsen H, Hastie T, Eisen MB, van de Rijn M, Jeffrey SS, Thorsen T, Quist H, Matese JC, Brown PO, Botstein D, Eystein Lønning P, Børresen-Dale AL "Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications." Proc Natl Acad Sci U S A 2001; 98: 19: 10869-74.

Chiang DY, Brown PO, Eisen MB "Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles." Bioinformatics 2001; 17 Suppl 1: S49-55.

Roberts RJ, Varmus HE, Ashburner M, Brown PO, Eisen MB, Khosla C, Kirschner M, Nusse R, Scott M, Wold B "Information access. Building a "GenBank" of the published literature." Science 2001; 291: 5512: 2318-9.

Miki R, Kadota K, Bono H, Mizuno Y, Tomaru Y, Carninci P, Itoh M, Shibata K, Kawai J, Konno H, Watanabe S, Sato K, Tokusumi Y, Kikuchi N, Ishii Y, Hamaguchi Y, Nishizuka I, Goto H, Nitanda H, Satomi S, Yoshiki A, Kusakabe M, DeRisi JL, Eisen MB, Iyer VR, Brown PO, Muramatsu M, Shimada H, Okazaki Y, Hayashizaki Y "Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays." Proc Natl Acad Sci U S A 2001; 98: 5: 2199-204.

Hastie T, Tibshirani R, Eisen MB, Alizadeh A, Levy R, Staudt L, Chan WC, Botstein D, Brown P "'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns." Genome Biol 2000; 1: 2: RESEARCH0003.

Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO "Genomic expression programs in the response of yeast cells to environmental changes." Mol Biol Cell 2000; 11: 12: 4241-57.

Perou CM, Sørlie T, Eisen MB, van de Rijn M, Jeffrey SS, Rees CA, Pollack JR, Ross DT, Johnsen H, Akslen LA, Fluge O, Pergamenschikov A, Williams C, Zhu SX, Lønning PE, Børresen-Dale AL, Brown PO, Botstein D "Molecular portraits of human breast tumours." Nature 2000; 406: 6797: 747-52.

Lossos IS, Alizadeh AA, Eisen MB, Chan WC, Brown PO, Botstein D, Staudt LM, Levy R "Ongoing immunoglobulin somatic mutation in germinal center B cell-like but not in activated B cell-like diffuse large cell lymphomas." Proc Natl Acad Sci U S A 2000; 97: 18: 10209-13.

Diehn M, Eisen MB, Botstein D, Brown PO "Large-scale identification of secreted and membrane-associated gene products using DNA microarrays." Nat Genet 2000; 25: 1: 58-62.

Ross DT, Scherf U, Eisen MB, Perou CM, Rees C, Spellman P, Iyer V, Jeffrey SS, Van de Rijn M, Waltham M, Pergamenschikov A, Lee JC, Lashkari D, Shalon D, Myers TG, Weinstein JN, Botstein D, Brown PO "Systematic variation in gene expression patterns in human cancer cell lines." Nat Genet 2000; 24: 3: 227-35.

Scherf, U., Ross, D.T., Waltham, M., Smith, L.H., Lee, J., Kohn, K.W., Reinhold, W.C., Myers, T., Andrews, D.T., Scudiero, D.A., Eisen, M.B., Sausville, E.A., Pommier, Y., Botstein, D., Brown, P.O.  and Weinstein, J.N. 2000. A gene expression database for the molecular pharmacology of cancer. Nature Genetics 24: 236-244.

Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, Powell JI, Yang L, Marti GE, Moore T, Hudson J, Lu L, Lewis DB, Tibshirani R, Sherlock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Levy R, Wilson W, Grever MR, Byrd JC, Botstein D, Brown PO, Staudt LM "Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling." Nature 2000; 403: 6769: 503-11.

Johannes G, Carter MS, Eisen MB, Brown PO, Sarnow P "Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray." Proc Natl Acad Sci U S A 1999; 96: 23: 13118-23.

Perou CM, Jeffrey SS, van de Rijn M, Rees CA, Eisen MB, Ross DT, Pergamenschikov A, Williams CF, Zhu SX, Lee JC, Lashkari D, Shalon D, Brown PO, Botstein D "Distinctive gene expression patterns in human mammary epithelial cells and breast cancers." Proc Natl Acad Sci U S A 1999; 96: 16: 9212-7.

Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO "Genome-wide analysis of DNA copy-number changes using cDNA microarrays." Nat Genet 1999; 23: 1: 41-6.

Alizadeh A, Eisen M, Davis RE, Ma C, Sabet H, Tran T, Powell JI, Yang L, Marti GE, Moore DT, Hudson JR, Chan WC, Greiner T, Weisenburger D, Armitage JO, Lossos I, Levy R, Botstein D, Brown PO, Staudt LM "The lymphochip: a specialized cDNA microarray for the genomic-scale analysis of gene expression in normal and malignant lymphocytes." Cold Spring Harb Symp Quant Biol 1999; 64: 71-8.

Eisen MB, Brown PO "DNA arrays for analysis of gene expression." Methods Enzymol 1999; 303: 179-205.

Iyer VR, Eisen MB, Ross DT, Schuler G, Moore T, Lee JC, Trent JM, Staudt LM, Hudson J, Boguski MS, Lashkari D, Shalon D, Botstein D, Brown PO "The transcriptional program in the response of human fibroblasts to serum." Science 1999; 283: 5398: 83-7.

Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B "Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization." Mol Biol Cell 1998; 9: 12: 3273-97.

Eisen MB, Spellman PT, Brown PO, Botstein D "Cluster analysis and display of genome-wide expression patterns." Proc Natl Acad Sci U S A 1998; 95: 25: 14863-8.

Alizadeh A, Eisen M, Botstein D, Brown PO, Staudt LM "Probing lymphocyte biology by genomic-scale gene expression analysis." J Clin Immunol 1998; 18: 6: 373-9.

Chu S, DeRisi J, Eisen M, Mulholland J, Botstein D, Brown PO, Herskowitz I "The transcriptional program of sporulation in budding yeast." Science 1998; 282: 5389: 699-705.